PropertyValue
?:abstract
  • idCOV is a phylogenetic pipeline for quickly identifying the clades of SARS-CoV-2 virus isolates from raw sequencing data based on a selected clade-defining marker list. Using a public dataset, we show that idCOV can make equivalent calls as annotated by Nextstrain.org on all three common clade systems using user uploaded FastQ files directly. Web and equivalent command-line interfaces are available. It can be deployed on any Linux environment, including personal computer, HPC and the cloud. The source code is available at https://github.com/xz-stjude/idcov. A documentation for installation can be found at https://github.com/xz-stjude/idcov/blob/master/README.md.
is ?:annotates of
?:creator
?:doi
?:doi
  • 10.1101/2020.10.08.330456
?:journal
  • bioRxiv
?:license
  • biorxiv
?:pdf_json_files
  • document_parses/pdf_json/71b3d58a2ae82662a5dd7f945e3e1ffd6d21daf5.json
?:pmid
?:pmid
  • 33052335.0
?:publication_isRelatedTo_Disease
?:sha_id
?:source
  • BioRxiv; Medline; WHO
?:title
  • idCOV: a pipeline for quick clade identification of SARS-CoV-2 isolates
?:type
?:year
  • 2020-10-09

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